PTSDgene database

SNP Report

Basic Info
Name rs6191 dbSNP Ensembl
Location 5:143278591 - 143278591(+)
Variant Seq A
Ancestral Allele A
Ref Seq C
Minor Allele Frequence 0.401558
Annotation downstream_gene_variant; 3_prime_UTR_variant
Variant Effect downstream_gene_variant(ENST00000424646, ENST00000504572, ENST00000394466, ENST00000231509, ENST00000503201); 3_prime_UTR_variant(ENST00000415690, ENST00000394464, ENST00000343796)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000378004, ENST00000418236, ENST00000443674, ENST00000274498)
PolyPhen Annotation benign; possibly_damaging
PolyPhen Variant Effect benign(ENST00000378004, ENST00000418236); possibly_damaging(ENST00000443674, ENST00000274498)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers;Strong transcription;Genic enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
NR3C1 nuclear receptor subfamily 3 group C member 1 5q31-q32 6(2/4/0)

SNPs in LD with rs6191 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx