PTSDgene database

SNP Report

Basic Info
Name rs61586133 dbSNP Ensembl
Location 8:27508659 - 27508659(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.0123802
Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000520666, ENST00000518328, ENST00000523827); intron_variant(ENST00000521400, ENST00000380476, ENST00000521780, ENST00000521924, ENST00000520623, ENST00000521684, ENST00000518379, ENST00000517536); non_coding_transcript_variant(ENST00000521924, ENST00000520623)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000518379, ENST00000380476, ENST00000521684, ENST00000521780, ENST00000518328, ENST00000521400)
PolyPhen Annotation benign; possibly_damaging
PolyPhen Variant Effect benign(ENST00000380476, ENST00000521780, ENST00000518328, ENST00000521400); possibly_damaging(ENST00000518379, ENST00000521684)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
EPHX2 epoxide hydrolase 2 8p21 Mapped by LD-proxy, rSNP target

SNPs in LD with rs61586133 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx