PTSDgene database

SNP Report

Basic Info
Name rs61012457 dbSNP Ensembl
Location 15:78573352 - 78573352(+)
Variant Seq G
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.205671
Annotation intron_variant
Variant Effect intron_variant(ENST00000559554, ENST00000299565)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000044462, ENST00000413382, ENST00000559154, ENST00000559948, ENST00000559365, ENST00000560217, ENST00000559082, ENST00000560737, ENST00000558094, ENST00000558281, ENST00000559437, ENST00000559146)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000044462, ENST00000413382, ENST00000559154, ENST00000559948, ENST00000559365, ENST00000560217, ENST00000559082, ENST00000560737, ENST00000558094, ENST00000558281, ENST00000559437, ENST00000559146)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State ZNF genes & repeats;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CHRNA5 cholinergic receptor, nicotinic alpha 5 15q24 2(1/1/0)

SNPs in LD with rs61012457 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx