PTSDgene database

SNP Report

Basic Info
Name rs572227 dbSNP Ensembl
Location 4:46249376 - 46249376(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.353035
Annotation downstream_gene_variant; 3_prime_UTR_variant
Variant Effect downstream_gene_variant(ENST00000540012, ENST00000507069, ENST00000630416, ENST00000510233, ENST00000356504, ENST00000513005); 3_prime_UTR_variant(ENST00000510861, ENST00000514090, ENST00000381620)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000514090, ENST00000540012, ENST00000381620, ENST00000507069, ENST00000356504, ENST00000510861)
PolyPhen Annotation unknown; benign
PolyPhen Variant Effect unknown(ENST00000540012, ENST00000507069); benign(ENST00000514090, ENST00000381620, ENST00000356504, ENST00000510861)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GABRA2 gamma-aminobutyric acid (GABA) A receptor, alpha 2 4p12 3(1/2/0)

SNPs in LD with rs572227 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx