SNP Report

Basic Info
Name |
rs572227
dbSNP
Ensembl
|
Location |
4:46249376 - 46249376(+) |
Variant Seq |
C |
Ancestral Allele |
T |
Ref Seq |
T |
Minor Allele Frequence |
0.353035 |
Annotation |
downstream_gene_variant; 3_prime_UTR_variant
|
Variant Effect |
downstream_gene_variant(ENST00000540012, ENST00000507069, ENST00000630416, ENST00000510233, ENST00000356504, ENST00000513005); 3_prime_UTR_variant(ENST00000510861, ENST00000514090, ENST00000381620)
|
SIFT Annotation |
tolerated
|
SIFT Variant Effect |
tolerated(ENST00000514090, ENST00000540012, ENST00000381620, ENST00000507069, ENST00000356504, ENST00000510861)
|
PolyPhen Annotation |
unknown; benign
|
PolyPhen Variant Effect |
unknown(ENST00000540012, ENST00000507069); benign(ENST00000514090, ENST00000381620, ENST00000356504, ENST00000510861)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
n/a
|
Chromatin State |
Enhancers
|
No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
Source |
LD-proxy |

SNP related association results

SNP related genes (count: 1)

SNPs in LD with rs572227 (count: 0)

SNP related eQTL (count: 1)