PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs56357543 dbSNP Ensembl
Location	17:45817181 - 45817181(+)
Variant Seq	T
Ancestral Allele	C
Ref Seq	C
Minor Allele Frequence	0.0860623
Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect	downstream_gene_variant(ENST00000587305); intron_variant(ENST00000577353, ENST00000582766, ENST00000619154, ENST00000293493, ENST00000583888, ENST00000634876, ENST00000634540, ENST00000398285, ENST00000352855, ENST00000314537, ENST00000347197, ENST00000580955, ENST00000339069); NMD_transcript_variant(ENST00000583888, ENST00000347197, ENST00000580955); non_coding_transcript_variant(ENST00000582766, ENST00000634876)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000352855, ENST00000314537, ENST00000293493, ENST00000398285, ENST00000577353, ENST00000580955, ENST00000583888, ENST00000347197)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000352855, ENST00000314537, ENST00000293493, ENST00000398285, ENST00000577353, ENST00000580955, ENST00000583888, ENST00000347197)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
CRHR1	corticotropin releasing hormone receptor 1	17q21.31	12(6/6/0)
MAPT-AS1	MAPT antisense RNA 1	17q21.31	Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs56357543 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
DND1P1	No	Adipose Subcutaneous	cis	GTEx