PTSDgene database

SNP Report

Basic Info
Name rs55788678 dbSNP Ensembl
Location 17:45914867 - 45914867(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.0860623
Annotation upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000574252); intron_variant(ENST00000570299, ENST00000351559, ENST00000571311, ENST00000340799, ENST00000262410, ENST00000535772, ENST00000446361, ENST00000344290, ENST00000334239); NMD_transcript_variant(ENST00000571311); non_coding_transcript_variant(ENST00000570299)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000329196)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000329196)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
MAPT microtubule associated protein tau 17q21 Mapped by LD-proxy, rSNP target

SNPs in LD with rs55788678 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
DND1P1 No Adipose Subcutaneous cis GTEx