PTSDgene database

SNP Report

Basic Info
Name rs55691306 dbSNP Ensembl
Location 17:45900929 - 45900929(+)
Variant Seq C
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.0860623
Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000624111); intron_variant(ENST00000351559, ENST00000570299, ENST00000334239, ENST00000344290, ENST00000340799, ENST00000535772, ENST00000571311, ENST00000262410, ENST00000446361); NMD_transcript_variant(ENST00000571311); non_coding_transcript_variant(ENST00000570299)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000329196)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000329196)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 4)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
MAPT-IT1 MAPT intronic transcript 1 17q21.31 Mapped by LD-proxy
MAPT-AS1 MAPT antisense RNA 1 17q21.31 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target
MAPT microtubule associated protein tau 17q21 Mapped by LD-proxy, rSNP target
KANSL1 KAT8 regulatory NSL complex subunit 1 17q21.31 rSNP target

SNPs in LD with rs55691306 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
DND1P1 No Adipose Subcutaneous cis GTEx