SNP Report
Basic Info
| Name | rs536086 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 4:46245204 - 46245204(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.389577 | ||
| Annotation | downstream_gene_variant; upstream_gene_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000514090, ENST00000510861, ENST00000356504, ENST00000630416, ENST00000381620, ENST00000540012); upstream_gene_variant(ENST00000568817) | ||
| SIFT Annotation | deleterious_-_low_confidence | ||
| SIFT Variant Effect | deleterious_-_low_confidence(ENST00000295452) | ||
| PolyPhen Annotation | probably_damaging | ||
| PolyPhen Variant Effect | probably_damaging(ENST00000295452) | ||
| rSNP? | No Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Inactive region | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| GABRA2 | gamma-aminobutyric acid (GABA) A receptor, alpha 2 | 4p12 | 3(1/2/0) |
SNPs in LD with rs536086 (count: 0)
SNP related eQTL (count: 1)