PTSDgene database

SNP Report

Basic Info
Name rs517005 dbSNP Ensembl
Location 11:18051595 - 18051595(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.279153
Annotation upstream_gene_variant
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000250018)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000250018)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
TPH1 tryptophan hydroxylase 1 11p15.3-p14 5(1/4/0)

SNPs in LD with rs517005 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx