PTSDgene database

SNP Report

Basic Info
Name rs4936271 dbSNP Ensembl
Location 11:113447983 - 113447983(+)
Variant Seq C
Ancestral Allele C
Ref Seq T
Minor Allele Frequence 0.435104
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000577203); upstream_gene_variant(ENST00000543292); intron_variant(ENST00000362072, ENST00000346454, ENST00000540600, ENST00000542616); non_coding_transcript_variant(ENST00000540600)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000362072, ENST00000543292, ENST00000538967, ENST00000544518, ENST00000542968, ENST00000346454)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000362072, ENST00000543292, ENST00000538967, ENST00000544518, ENST00000542968, ENST00000346454)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Enhancers;Flanking Active TSS;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
MIR4301 microRNA 4301 11 Mapped by Literature SNP, Mapped by LD-proxy
DRD2 dopamine receptor D2 11q23.2 18(11/7/0)

SNPs in LD with rs4936271 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
TMPRSS5 No Adipose Subcutaneous cis GTEx