SNP Report

Basic Info
Name |
rs4792886
dbSNP
Ensembl
|
Location |
17:45799466 - 45799466(+) |
Variant Seq |
A |
Ancestral Allele |
A |
Ref Seq |
G |
Minor Allele Frequence |
0.127396 |
Annotation |
non_coding_transcript_exon_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
|
Variant Effect |
non_coding_transcript_exon_variant(ENST00000634876); intron_variant(ENST00000634540, ENST00000339069, ENST00000352855, ENST00000582766, ENST00000347197, ENST00000587305, ENST00000293493, ENST00000619154, ENST00000577353, ENST00000314537, ENST00000398285); NMD_transcript_variant(ENST00000347197); non_coding_transcript_variant(ENST00000582766, ENST00000634876, ENST00000587305)
|
SIFT Annotation |
deleterious; tolerated
|
SIFT Variant Effect |
deleterious(ENST00000430334); tolerated(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780)
|
PolyPhen Annotation |
benign; possibly_damaging
|
PolyPhen Variant Effect |
benign(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780); possibly_damaging(ENST00000430334, ENST00000584420)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
n/a
|
Chromatin State |
Weak transcription
|
No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
Source |
LD-proxy |

SNP related association results

SNP related genes (count: 2)

SNPs in LD with rs4792886 (count: 0)

SNP related eQTL (count: 1)