PTSDgene database

SNP Report

Basic Info
Name rs4773155 dbSNP Ensembl
Location 13:110318719 - 110318719(+)
Variant Seq C
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.478634
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000400163, ENST00000480771, ENST00000360467); non_coding_transcript_variant(ENST00000480771)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000375820)
PolyPhen Annotation benign; probably_damaging
PolyPhen Variant Effect benign(ENST00000375820); probably_damaging(ENST00000543140)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Genic enhancers;Strong transcription;Enhancers
No. of Marker's Association Results 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Almli, L. M.,2015 PTSD Symptoms as measured by the quantitave CAPS scores In (SBPBC cohort) discovery stage: (sex and top three princ...... In (SBPBC cohort) discovery stage: (sex and top three principal components as covariates) B (SE)=20.03 (3.97), P-value=1.35E-06. More... None None Trend


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
COL4A2 collagen type IV alpha 2 13q34 1(0/0/1)

SNPs in LD with rs4773155 (count: 1)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx