SNP Report
Basic Info
| Name | rs4773155 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 13:110318719 - 110318719(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | A | ||
| Ref Seq | A | ||
| Minor Allele Frequence | 0.478634 | ||
| Annotation | intron_variant; non_coding_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000400163, ENST00000480771, ENST00000360467); non_coding_transcript_variant(ENST00000480771) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000375820) | ||
| PolyPhen Annotation | benign; probably_damaging | ||
| PolyPhen Variant Effect | benign(ENST00000375820); probably_damaging(ENST00000543140) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;Genic enhancers;Strong transcription;Enhancers | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Almli, L. M.,2015 | PTSD Symptoms as measured by the quantitave CAPS scores | In (SBPBC cohort) discovery stage: (sex and top three princ...... In (SBPBC cohort) discovery stage: (sex and top three principal components as covariates) B (SE)=20.03 (3.97), P-value=1.35E-06. More... | None None | Trend |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| COL4A2 | collagen type IV alpha 2 | 13q34 | 1(0/0/1) |
SNPs in LD with rs4773155 (count: 1)
Literature-origin SNPs (count: 0)
LD-proxies (count: 1)
SNP related eQTL (count: 1)