Gene Report
| Approved Symbol | COL4A2 |
|---|---|
| Symbol Alias | "FLJ22259|DKFZp686I14213" |
| Approved Name | collagen type IV alpha 2 |
| Previous Name | collagen, type IV, alpha 2 |
| Name Alias | "canstatin|collagen type IV alpha 2" |
| Location | 13q34 |
| Position | chr13:110305812-110513027, 1 |
| External Links |
HGNC: 2203 Entrez Gene: 1284 Ensembl: ENSG00000134871 UCSC: uc001vqx.3 |
| No. of Association Results | 1 (Positive: 0; Negative: 0; trend: 1) |
| Annotation Type | Literature-origin, Mapped by Literature SNP, Mapped by LD-proxy |
Gene related association results
Normal genetic study related association results (count: 1)
| Reference | Phenotype | Marker | Gene's Category |
|---|---|---|---|
| Almli, L. M.,2015 | PTSD Symptoms as measured by the quantitave CAPS scores | rs4773155 | Trend |
Gene functional annotation
Gene related GO terms (count: 18)
Gene related KEGG pathways (count: 4)
| ID | Name | No. of Genes in PTSDgene |
|---|---|---|
| hsa05222 | Small cell lung cancer | 5 |
| hsa04512 | ECM-receptor interaction | 3 |
| hsa04510 | Focal adhesion | 6 |
| hsa01430 | Cell Communication | 3 |
Gene related interactors from protein-protein interactions data in PINA v2 (count: 19)
| Gene | Interactor | Interactor in PTSDgene? | Experiment Method | Interaction Type | PMID |
|---|---|---|---|---|---|
| COL4A2 | SKIL | No | -- | -- | 15231748 , 15231748 , 15231748 , 15231748 , 15231748 |
| COL4A2 | HABP2 | No | -- | -- | 1724753 |
| COL4A2 | ATF7IP | No | -- | -- | 15231748 , 15231748 , 15231748 |
| COL4A2 | BGN | No | -- | -- | 11259413 |
| COL4A2 | DAZAP2 | No | -- | -- | 21900206 , 21900206 , 21900206 |
| COL4A2 | CD93 | No | -- | -- | 1377218 |
| COL4A2 | TGFBI | No | -- | -- | 11867580 |
| COL4A2 | MMP9 | No | -- | -- | 9878537 |
| COL4A2 | FBLN2 | No | -- | -- | 7500359 |
| COL4A2 | KLK6 | No | -- | -- | 12878203 |
| COL4A2 | CSNK2B | No | -- | -- | 21900206 , 21900206 , 21900206 |
| COL4A2 | ANXA7 | No | -- | -- | 21900206 , 21900206 , 21900206 |
| COL4A2 | ANTXR2 | No | -- | -- | 11683410 |
| COL4A2 | VHL | No | -- | -- | 17339318 , 17339318 , 21942715 |
| COL4A2 | FAM46A | No | -- | -- | 15231748 , 15231748 |
| COL4A2 | FBXO6 | No | -- | -- | 22268729 |
| COL4A2 | BMP3 | No | -- | -- | 2211625 |
| COL4A2 | OSM | No | -- | -- | 11711546 |
| COL4A2 | SMN1 | No | -- | -- | 21900206 , 21900206 , 21900206 |
Copyright: Key Lab of Mental Health, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: April 1, 2018