PTSDgene database

SNP Report

Basic Info
Name rs38462 dbSNP Ensembl
Location 7:30544036 - 30544036(+)
Variant Seq G
Ref Seq C
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000355837, ENST00000625565, ENST00000440438, ENST00000426529); upstream_gene_variant(ENST00000438110); intron_variant(ENST00000578293, ENST00000631229, ENST00000598361, ENST00000434399, ENST00000580902, ENST00000626902); non_coding_transcript_variant(ENST00000578293, ENST00000631229, ENST00000434399, ENST00000580902, ENST00000626902)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000275428, ENST00000426081, ENST00000409436, ENST00000598361)
PolyPhen Annotation benign; probably_damaging
PolyPhen Variant Effect benign(ENST00000409436); probably_damaging(ENST00000275428, ENST00000426081, ENST00000598361)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Weak transcription;Enhancers;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 0)

SNPs in LD with rs38462 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CAT Yes Adipose Subcutaneous cis GTEx