PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs3810595 dbSNP Ensembl
Location	22:19962121 - 19962121(+)
Variant Seq	C
Ancestral Allele	C
Ref Seq	G
Minor Allele Frequence	0.356629
Annotation	upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect	upstream_gene_variant(ENST00000428707, ENST00000493893, ENST00000585066, ENST00000449653); intron_variant(ENST00000406520, ENST00000207636, ENST00000403710, ENST00000403184, ENST00000361682, ENST00000407537, ENST00000467943, ENST00000412786); NMD_transcript_variant(ENST00000207636); non_coding_transcript_variant(ENST00000467943)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000406520, ENST00000412786, ENST00000361682, ENST00000207636, ENST00000407537, ENST00000449653, ENST00000403184, ENST00000403710)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000406520, ENST00000412786, ENST00000361682, ENST00000207636, ENST00000407537, ENST00000449653, ENST00000403184, ENST00000403710)
rSNP?	No Link in rVarBase
Related Regulatory Elements	N.A.
Chromatin State	N.A.
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
COMT	catechol-O-methyltransferase	22q11.21	21(9/12/0)

SNPs in LD with rs3810595 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
FBLL1	No	Adipose Subcutaneous	cis	GTEx