PTSDgene database

SNP Report

Basic Info
Name rs3782203 dbSNP Ensembl
Location 12:117282606 - 117282606(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.153754
Annotation upstream_gene_variant; intron_variant
Variant Effect upstream_gene_variant(ENST00000618414); intron_variant(ENST00000344089, ENST00000317775, ENST00000618760, ENST00000338101)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000344089, ENST00000317775, ENST00000338101, ENST00000618760)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000344089, ENST00000317775, ENST00000338101, ENST00000618760)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
NOS1 nitric oxide synthase 1 12q24.22 1(1/0/0)

SNPs in LD with rs3782203 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx