PTSDgene database

SNP Report

Basic Info
Name rs3751285 dbSNP Ensembl
Location 1:162343728 - 162343728(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.354433
Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant
Variant Effect downstream_gene_variant(ENST00000516453, ENST00000384996); intron_variant(ENST00000430120, ENST00000530878, ENST00000361897); NMD_transcript_variant(ENST00000430120)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000361897, ENST00000430120, ENST00000530878)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000361897, ENST00000430120, ENST00000530878)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Strong transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 4)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
MIR556 microRNA 556 1q23.3 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target
NOS1AP nitric oxide synthase 1 adaptor protein 1q23.3 3(3/0/0)
RNA5SP61 RNA, 5S ribosomal pseudogene 61 1q23.3 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 1q23.2 rSNP target

SNPs in LD with rs3751285 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
AC005154.8 No Adipose Subcutaneous cis GTEx