PTSDgene database

SNP Report

Basic Info
Name rs3743077 dbSNP Ensembl
Location 15:78602554 - 78602554(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.233027
Annotation upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000624172); intron_variant(ENST00000558903, ENST00000559658, ENST00000348639, ENST00000326828); NMD_transcript_variant(ENST00000559658); non_coding_transcript_variant(ENST00000558903)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000559658, ENST00000348639, ENST00000326828)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000559658, ENST00000348639, ENST00000326828)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CHRNA3 cholinergic receptor, nicotinic alpha 3 15q24 1(0/1/0)

SNPs in LD with rs3743077 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx