PTSDgene database

SNP Report

Basic Info
Name rs3741202 dbSNP Ensembl
Location 11:18013045 - 18013045(+)
Variant Seq C
Ref Seq G
Minor Allele Frequence 0.45607
Annotation downstream_gene_variant; 5_prime_UTR_variant; upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000250018); 5_prime_UTR_variant(ENST00000265965); upstream_gene_variant(ENST00000532265, ENST00000530951, ENST00000533328, ENST00000532389, ENST00000527494, ENST00000525422, ENST00000529728, ENST00000532212, ENST00000524716, ENST00000530925, ENST00000530613, ENST00000528200); intron_variant(ENST00000525523); non_coding_transcript_variant(ENST00000525523)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000250018)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000250018)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;Chromatin interactive region
Chromatin State Active TSS;Flanking Active TSS;Enhancers;Bivalent/Poised TSS;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 4)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SERGEF secretion regulating guanine nucleotide exchange factor 11p14.3 Mapped by LD-proxy, rSNP target
ATE1 arginyltransferase 1 10q26 rSNP target
IMPDH1 IMP (inosine 5'-monophosphate) dehydrogenase 1 7q31.3-q32 rSNP target
TPH1 tryptophan hydroxylase 1 11p15.3-p14 5(1/4/0)

SNPs in LD with rs3741202 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx