SNP Report

Basic Info
Name |
rs28754581
dbSNP
Ensembl
|
Location |
15:61188193 - 61188193(+) |
Variant Seq |
C |
Ancestral Allele |
C |
Ref Seq |
T |
Minor Allele Frequence |
0.219449 |
Annotation |
intron_variant; NMD_transcript_variant; non_coding_transcript_variant
|
Variant Effect |
intron_variant(ENST00000560300, ENST00000557822, ENST00000558904, ENST00000551975, ENST00000560876, ENST00000559145, ENST00000335670, ENST00000561093); NMD_transcript_variant(ENST00000551975); non_coding_transcript_variant(ENST00000560300, ENST00000557822, ENST00000560876, ENST00000559145, ENST00000561093)
|
SIFT Annotation |
deleterious_-_low_confidence; tolerated
|
SIFT Variant Effect |
deleterious_-_low_confidence(ENST00000551975); tolerated(ENST00000335670)
|
PolyPhen Annotation |
benign; possibly_damaging
|
PolyPhen Variant Effect |
benign(ENST00000335670); possibly_damaging(ENST00000551975)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
n/a
|
Chromatin State |
Weak transcription;Enhancers;Flanking Active TSS
|
No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
Source |
LD-proxy |

SNP related association results

SNP related genes (count: 1)

SNPs in LD with rs28754581 (count: 0)

SNP related eQTL (count: 1)