PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs28716779 dbSNP Ensembl
Location	15:61193099 - 61193099(+)
Variant Seq	A
Ancestral Allele	G
Ref Seq	G
Minor Allele Frequence	0.207668
Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect	intron_variant(ENST00000561093, ENST00000560876, ENST00000558904, ENST00000557822, ENST00000335670, ENST00000551975, ENST00000559145, ENST00000560300); NMD_transcript_variant(ENST00000551975); non_coding_transcript_variant(ENST00000561093, ENST00000560876, ENST00000557822, ENST00000559145, ENST00000560300)
SIFT Annotation	deleterious_-_low_confidence; tolerated
SIFT Variant Effect	deleterious_-_low_confidence(ENST00000551975); tolerated(ENST00000335670)
PolyPhen Annotation	benign; possibly_damaging
PolyPhen Variant Effect	benign(ENST00000335670); possibly_damaging(ENST00000551975)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
RORA	RAR related orphan receptor A	15q21-q22	6(4/2/0)

SNPs in LD with rs28716779 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
RP11-259G18.3	No	Adipose Subcutaneous	cis	GTEx