PTSDgene database

SNP Report

Basic Info
Name rs28665972 dbSNP Ensembl
Location 16:55658718 - 55658718(+)
Variant Seq G
Ancestral Allele G
Ref Seq A
Minor Allele Frequence 0.248802
Annotation intron_variant
Variant Effect intron_variant(ENST00000568943, ENST00000379906, ENST00000566163, ENST00000219833, ENST00000568655, ENST00000561820, ENST00000568529, ENST00000414754)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000568655); tolerated(ENST00000379906, ENST00000568529, ENST00000414754, ENST00000568943, ENST00000566163, ENST00000561820, ENST00000219833)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000568655, ENST00000379906, ENST00000568529, ENST00000414754, ENST00000568943, ENST00000566163, ENST00000561820, ENST00000219833)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Bivalent Enhancer;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2 16q12.2 13(4/9/0)

SNPs in LD with rs28665972 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx