PTSDgene database

SNP Report

Basic Info
Name rs28611274 dbSNP Ensembl
Location 15:61193794 - 61193794(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.208866
Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000561093, ENST00000558904, ENST00000335670, ENST00000559145, ENST00000551975, ENST00000560876, ENST00000557822, ENST00000560300); NMD_transcript_variant(ENST00000551975); non_coding_transcript_variant(ENST00000561093, ENST00000559145, ENST00000560876, ENST00000557822, ENST00000560300)
SIFT Annotation deleterious_-_low_confidence; tolerated
SIFT Variant Effect deleterious_-_low_confidence(ENST00000551975); tolerated(ENST00000335670)
PolyPhen Annotation benign; possibly_damaging
PolyPhen Variant Effect benign(ENST00000335670); possibly_damaging(ENST00000551975)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
RORA RAR related orphan receptor A 15q21-q22 6(4/2/0)

SNPs in LD with rs28611274 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx