PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs279864 dbSNP Ensembl
Location	4:46309018 - 46309018(+)
Variant Seq	A
Ancestral Allele	A
Ref Seq	G
Minor Allele Frequence	0.498602
Annotation	downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant
Variant Effect	downstream_gene_variant(ENST00000506961, ENST00000503806); upstream_gene_variant(ENST00000514236); intron_variant(ENST00000514090, ENST00000515082, ENST00000510233, ENST00000630416, ENST00000381620, ENST00000514193, ENST00000356504, ENST00000513005, ENST00000507069, ENST00000510861, ENST00000540012); NMD_transcript_variant(ENST00000510233, ENST00000630416, ENST00000514193, ENST00000513005)
SIFT Annotation	deleterious
SIFT Variant Effect	deleterious(ENST00000506961, ENST00000510233, ENST00000514090, ENST00000507069, ENST00000503806, ENST00000381620, ENST00000510861, ENST00000540012, ENST00000515082, ENST00000356504)
PolyPhen Annotation	benign; probably_damaging
PolyPhen Variant Effect	benign(ENST00000506961, ENST00000510233, ENST00000514090, ENST00000503806, ENST00000381620, ENST00000510861, ENST00000515082, ENST00000356504); probably_damaging(ENST00000507069, ENST00000540012)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
GABRA2	gamma-aminobutyric acid (GABA) A receptor, alpha 2	4p12	3(1/2/0)

SNPs in LD with rs279864 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CRHR1-IT1	Yes	Adipose Subcutaneous	cis	GTEx