PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs279859 dbSNP Ensembl
Location	4:46312350 - 46312350(+)
Variant Seq	G
Ancestral Allele	G
Ref Seq	A
Minor Allele Frequence	0.497204
Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant
Variant Effect	downstream_gene_variant(ENST00000506961, ENST00000503806); intron_variant(ENST00000514193, ENST00000513005, ENST00000510861, ENST00000514090, ENST00000507069, ENST00000510233, ENST00000515082, ENST00000540012, ENST00000381620, ENST00000630416, ENST00000356504); NMD_transcript_variant(ENST00000514193, ENST00000513005, ENST00000510233, ENST00000630416)
SIFT Annotation	tolerated_-_low_confidence; tolerated
SIFT Variant Effect	tolerated_-_low_confidence(ENST00000514236); tolerated(ENST00000514090, ENST00000540012, ENST00000507069, ENST00000356504, ENST00000515082, ENST00000381620, ENST00000510861)
PolyPhen Annotation	benign; probably_damaging
PolyPhen Variant Effect	benign(ENST00000514090, ENST00000356504, ENST00000515082, ENST00000381620, ENST00000514236, ENST00000510861); probably_damaging(ENST00000540012, ENST00000507069)
rSNP?	No Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Inactive region
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
GABRA2	gamma-aminobutyric acid (GABA) A receptor, alpha 2	4p12	3(1/2/0)

SNPs in LD with rs279859 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CRHR1-IT1	Yes	Adipose Subcutaneous	cis	GTEx