PTSDgene database

SNP Report

Basic Info
Name rs2746072 dbSNP Ensembl
Location 1:192808677 - 192808677(+)
Variant Seq C
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.322085
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000483295, ENST00000235382, ENST00000464302, ENST00000487236)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000235382)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000235382)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;Chromatin interactive region
Chromatin State Active TSS;Bivalent/Poised TSS;Flanking Active TSS;Transcr. at gene 5' nd 3';ZNF genes & repeats
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CDC73 cell division cycle 73 1q25 rSNP target
RGS2 regulator of G-protein signaling 2 1q31 7(2/5/0)
APOA1BP apolipoprotein A-I binding protein 1q21 rSNP target

SNPs in LD with rs2746072 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
WNT3 No Adipose Subcutaneous cis GTEx