PTSDgene database

SNP Report

Basic Info
Name rs2709787 dbSNP Ensembl
Location 7:30574057 - 30574057(+)
Variant Seq T
Ancestral Allele T
Ref Seq G
Minor Allele Frequence 0.188099
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000583664, ENST00000579174, ENST00000584023, ENST00000582549, ENST00000578994, ENST00000580440, ENST00000454922); upstream_gene_variant(ENST00000579024, ENST00000614950, ENST00000582145, ENST00000584621, ENST00000584108); intron_variant(ENST00000426529, ENST00000584199, ENST00000581794, ENST00000581665, ENST00000578245, ENST00000582733, ENST00000584372); non_coding_transcript_variant(ENST00000426529, ENST00000584199, ENST00000581794, ENST00000581665, ENST00000578245, ENST00000582733, ENST00000584372)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000275428, ENST00000426081, ENST00000409436, ENST00000598361)
PolyPhen Annotation benign; probably_damaging
PolyPhen Variant Effect benign(ENST00000409436); probably_damaging(ENST00000275428, ENST00000426081, ENST00000598361)
rSNP? Yes Link in rVarBase
Related Regulatory Elements lncRNA
Chromatin State ZNF genes & repeats;Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 0)

SNPs in LD with rs2709787 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CAT Yes Adipose Subcutaneous cis GTEx