PTSDgene database

SNP Report

Basic Info
Name rs265983 dbSNP Ensembl
Location 5:175408114 - 175408114(+)
Variant Seq T
Ancestral Allele T
Ref Seq A
Minor Allele Frequence 0.302516
Annotation downstream_gene_variant
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000507785); tolerated(ENST00000239243)
PolyPhen Annotation benign; probably_damaging
PolyPhen Variant Effect benign(ENST00000239243); probably_damaging(ENST00000507785)
rSNP? No Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Inactive region
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Nelson, E. C.,2014 PTSD P-value=0.015, OR=0.82 P-value=0.015, OR=0.82 Although the association of this SNP is of considerably lowe...... Although the association of this SNP is of considerably lower magnitude, it is interesting to note. More... Non-significant


SNP related genes (count: 0)

SNPs in LD with rs265983 (count: 3)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx