SNP Report
Basic Info
| Name | rs2515126 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 8:96507003 - 96507003(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | C | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.254992 | ||
| Annotation | intron_variant; non_coding_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000518385, ENST00000519587, ENST00000522911, ENST00000520233, ENST00000302190); non_coding_transcript_variant(ENST00000519587, ENST00000520233) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000302190, ENST00000518385) | ||
| PolyPhen Annotation | possibly_damaging | ||
| PolyPhen Variant Effect | possibly_damaging(ENST00000302190, ENST00000518385) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;ZNF genes & repeats | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| SDC2 | syndecan 2 | 8q22-q23 | 1(0/0/1) |
SNPs in LD with rs2515126 (count: 0)
SNP related eQTL (count: 1)