PTSDgene database

SNP Report

Basic Info
Name rs2471857 dbSNP Ensembl
Location 11:113427617 - 113427617(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.260184
Annotation upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000535984, ENST00000544518, ENST00000542968, ENST00000538967); intron_variant(ENST00000346454, ENST00000542616, ENST00000362072, ENST00000540600, ENST00000543292); non_coding_transcript_variant(ENST00000540600)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000538967, ENST00000362072, ENST00000544518, ENST00000346454, ENST00000543292, ENST00000542968)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000538967, ENST00000362072, ENST00000544518, ENST00000346454, ENST00000543292, ENST00000542968)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
DRD2 dopamine receptor D2 11q23.2 18(11/7/0)

SNPs in LD with rs2471857 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx