SNP Report
Name | rs2460905 dbSNP Ensembl | ||
---|---|---|---|
Location | 8:12977091 - 12977091(+) | ||
Variant Seq | A | ||
Ancestral Allele | G | ||
Ref Seq | G | ||
Minor Allele Frequence | 0.057508 | ||
Annotation | intron_variant; non_coding_transcript_variant | ||
Variant Effect | intron_variant(ENST00000524591, ENST00000532376, ENST00000525249, ENST00000528753, ENST00000528335, ENST00000400069, ENST00000447063); non_coding_transcript_variant(ENST00000525249, ENST00000528335) | ||
SIFT Annotation | tolerated_-_low_confidence | ||
SIFT Variant Effect | tolerated_-_low_confidence(ENST00000398246) | ||
PolyPhen Annotation | benign | ||
PolyPhen Variant Effect | benign(ENST00000398246) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Enhancers;Weak transcription;Flanking Active TSS | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.