SNP Report
Basic Info
| Name | rs2283142 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 10:117271939 - 117271939(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.172724 | ||
| Annotation | upstream_gene_variant; intron_variant; non_coding_transcript_variant | ||
| Variant Effect | upstream_gene_variant(ENST00000614747); intron_variant(ENST00000298472, ENST00000497497); non_coding_transcript_variant(ENST00000497497) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000334464) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000334464) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | lncRNA | ||
| Chromatin State | Enhancers;Weak transcription;Strong transcription | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| SLC18A2 | solute carrier family 18 (vesicular monoamine transporter), member 2 | 10q25 | 3(2/1/0) |
SNPs in LD with rs2283142 (count: 0)
SNP related eQTL (count: 1)