PTSDgene database

SNP Report

Basic Info
Name rs2270007 dbSNP Ensembl
Location 7:30660356 - 30660356(+)
Variant Seq C
Ancestral Allele C
Ref Seq G
Minor Allele Frequence 0.200679
Annotation intron_variant; NMD_transcript_variant
Variant Effect intron_variant(ENST00000348438, ENST00000471646, ENST00000341843, ENST00000452278, ENST00000506074); NMD_transcript_variant(ENST00000452278)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000348438, ENST00000341843, ENST00000471646, ENST00000506074)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000348438, ENST00000341843, ENST00000471646, ENST00000506074)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers;Active TSS
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CRHR2 corticotropin releasing hormone receptor 2 7p14.3 2(2/0/0)

SNPs in LD with rs2270007 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx