PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs2270007 dbSNP Ensembl
Location	7:30660356 - 30660356(+)
Variant Seq	C
Ancestral Allele	C
Ref Seq	G
Minor Allele Frequence	0.200679
Annotation	intron_variant; NMD_transcript_variant
Variant Effect	intron_variant(ENST00000348438, ENST00000471646, ENST00000341843, ENST00000452278, ENST00000506074); NMD_transcript_variant(ENST00000452278)
SIFT Annotation	deleterious
SIFT Variant Effect	deleterious(ENST00000348438, ENST00000341843, ENST00000471646, ENST00000506074)
PolyPhen Annotation	probably_damaging
PolyPhen Variant Effect	probably_damaging(ENST00000348438, ENST00000341843, ENST00000471646, ENST00000506074)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription;Enhancers;Active TSS
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
CRHR2	corticotropin releasing hormone receptor 2	7p14.3	2(2/0/0)

SNPs in LD with rs2270007 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx