PTSDgene database

SNP Report

Basic Info
Name rs2267740 dbSNP Ensembl
Location 7:31097389 - 31097389(+)
Variant Seq T
Ancestral Allele T
Ref Seq C
Minor Allele Frequence 0.324281
Annotation intron_variant
Variant Effect intron_variant(ENST00000396211, ENST00000614107, ENST00000436116, ENST00000409489, ENST00000304166, ENST00000409363)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000409489, ENST00000614107, ENST00000436116, ENST00000409363, ENST00000304166, ENST00000396211)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000409489, ENST00000614107, ENST00000436116, ENST00000409363, ENST00000304166, ENST00000396211)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription;Enhancers
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Ressler, K. J.,2011 PTSD diagnosis Females: P-value=0.52, males: P-value=0.864 Females: P-value=0.52, males: P-value=0.864 No significant result in females or males after multiple cor...... No significant result in females or males after multiple corrections. More... Non-significant


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ADCYAP1R1 adenylate cyclase activating polypeptide 1 (pituitary) receptor type I 7p14.3 19(8/11/0)

SNPs in LD with rs2267740 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx