PTSDgene database

SNP Report

Basic Info
Name rs2245660 dbSNP Ensembl
Location 5:1409604 - 1409604(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.0189696
Annotation intron_variant
Variant Effect intron_variant(ENST00000270349)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000270349); tolerated(ENST00000270349)
PolyPhen Annotation benign; possibly_damaging
PolyPhen Variant Effect benign(ENST00000270349); possibly_damaging(ENST00000270349)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Enhancers;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 5p15.3 21(11/10/0)

SNPs in LD with rs2245660 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx