PTSDgene database

SNP Report

Basic Info
Name rs2242593 dbSNP Ensembl
Location 11:113405543 - 113405543(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.208866
Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000346454, ENST00000362072, ENST00000542968, ENST00000544518); intron_variant(ENST00000546284); non_coding_transcript_variant(ENST00000546284)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000303941)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000303941)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
DRD2 dopamine receptor D2 11q23.2 18(11/7/0)

SNPs in LD with rs2242593 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx