PTSDgene database

SNP Report

Basic Info
Name rs2239393 dbSNP Ensembl
Location 22:19962905 - 19962905(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.366414
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant
Variant Effect downstream_gene_variant(ENST00000467943); upstream_gene_variant(ENST00000428707, ENST00000493893, ENST00000585066); intron_variant(ENST00000449653, ENST00000412786, ENST00000406520, ENST00000403184, ENST00000361682, ENST00000207636, ENST00000407537, ENST00000403710); NMD_transcript_variant(ENST00000207636)
SIFT Annotation tolerated_-_low_confidence
SIFT Variant Effect tolerated_-_low_confidence(ENST00000403184)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000403184)
rSNP? No Link in rVarBase
Related Regulatory Elements N.A.
Chromatin State N.A.
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
COMT catechol-O-methyltransferase 22q11.21 21(9/12/0)

SNPs in LD with rs2239393 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
FBLL1 No Adipose Subcutaneous cis GTEx