PTSDgene database

SNP Report

Basic Info
Name rs2164304 dbSNP Ensembl
Location 8:130789254 - 130789254(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.467053
Annotation intron_variant
Variant Effect intron_variant(ENST00000286355, ENST00000377928)
SIFT Annotation deleterious_-_low_confidence; deleterious
SIFT Variant Effect deleterious_-_low_confidence(ENST00000377928); deleterious(ENST00000286355)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000377928, ENST00000286355)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ADCY8 adenylate cyclase 8 (brain) 8q24 1(0/0/1)

SNPs in LD with rs2164304 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx