SNP Report
Basic Info
| Name | rs213638 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 1:25861747 - 25861747(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.488219 | ||
| Annotation | upstream_gene_variant; 3_prime_UTR_variant; intron_variant; non_coding_transcript_variant | ||
| Variant Effect | upstream_gene_variant(ENST00000374298, ENST00000538789); 3_prime_UTR_variant(ENST00000374296); intron_variant(ENST00000455431); non_coding_transcript_variant(ENST00000455431) | ||
| SIFT Annotation | deleterious; tolerated | ||
| SIFT Variant Effect | deleterious(ENST00000374296); tolerated(ENST00000374296) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000374296) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | TF binding region;Chromatin interactive region | ||
| Chromatin State | Weak transcription;Enhancers;Flanking Active TSS;Genic enhancers;Strong transcription | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 4)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| PAQR7 | progestin and adipoQ receptor family member VII | 1p35.3 | Mapped by LD-proxy, rSNP target |
| MTFR1L | mitochondrial fission regulator 1-like | 1p36.11 | rSNP target |
| AUNIP | aurora kinase A and ninein interacting protein | 1p36.11 | Mapped by LD-proxy, rSNP target |
| PAFAH2 | platelet-activating factor acetylhydrolase 2 | 1p34.3 | Mapped by LD-proxy, rSNP target |
SNPs in LD with rs213638 (count: 0)
SNP related eQTL (count: 1)