PTSDgene database

SNP Report

Basic Info
Name rs1819741 dbSNP Ensembl
Location 1:192815708 - 192815708(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.302516
Annotation downstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000235382, ENST00000483295, ENST00000464302, ENST00000487236)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000235382)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000235382)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
RGS2 regulator of G-protein signaling 2 1q31 7(2/5/0)

SNPs in LD with rs1819741 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx