PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs17802184 dbSNP Ensembl
Location	10:60063571 - 60063571(+)
Variant Seq	G
Ancestral Allele	T
Ref Seq	T
Minor Allele Frequence	0.0313498
Annotation	downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant
Variant Effect	downstream_gene_variant(ENST00000414383, ENST00000619719); upstream_gene_variant(ENST00000469721, ENST00000612776); intron_variant(ENST00000355288, ENST00000618374, ENST00000621739, ENST00000610321, ENST00000280772, ENST00000613207, ENST00000459732, ENST00000514197, ENST00000616444, ENST00000503366, ENST00000373827, ENST00000511043, ENST00000373820, ENST00000610901); NMD_transcript_variant(ENST00000621739)
SIFT Annotation	tolerated_-_low_confidence; deleterious_-_low_confidence; deleterious; tolerated
SIFT Variant Effect	tolerated_-_low_confidence(ENST00000355288, ENST00000503366, ENST00000373827, ENST00000280772, ENST00000610321, ENST00000373820, ENST00000502769, ENST00000617800); deleterious_-_low_confidence(ENST00000355288, ENST00000503366, ENST00000373827, ENST00000280772, ENST00000610321, ENST00000373820, ENST00000502769, ENST00000617800); deleterious(ENST00000612776, ENST00000616444); tolerated(ENST00000612776, ENST00000616444)
PolyPhen Annotation	benign; probably_damaging; possibly_damaging
PolyPhen Variant Effect	benign(ENST00000355288, ENST00000612776, ENST00000503366, ENST00000373827, ENST00000280772, ENST00000610321, ENST00000373820, ENST00000502769, ENST00000617800, ENST00000616444); probably_damaging(ENST00000610321, ENST00000616444); possibly_damaging(ENST00000612776, ENST00000373827, ENST00000502769)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription;Enhancers;Strong transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
ANK3	ankyrin 3, node of Ranvier (ankyrin G)	10q21	2(2/0/0)

SNPs in LD with rs17802184 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
RP11-259G18.3	No	Adipose Subcutaneous	cis	GTEx