PTSDgene database

SNP Report

Basic Info
Name rs17721739 dbSNP Ensembl
Location 11:18034813 - 18034813(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.116613
Annotation intron_variant; NMD_transcript_variant
Variant Effect intron_variant(ENST00000528338, ENST00000417164, ENST00000250018); NMD_transcript_variant(ENST00000417164)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000528338, ENST00000417164, ENST00000250018)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000528338, ENST00000417164, ENST00000250018)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
TPH1 tryptophan hydroxylase 1 11p15.3-p14 5(1/4/0)

SNPs in LD with rs17721739 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx