SNP Report

Basic Info
Name |
rs17689918
dbSNP
Ensembl
|
Location |
17:45832722 - 45832722(+) |
Variant Seq |
A |
Ancestral Allele |
G |
Ref Seq |
G |
Minor Allele Frequence |
0.0896565 |
Annotation |
downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
|
Variant Effect |
downstream_gene_variant(ENST00000582766, ENST00000580955); upstream_gene_variant(ENST00000580876, ENST00000535778); intron_variant(ENST00000293493, ENST00000634876, ENST00000398285, ENST00000583888, ENST00000581479, ENST00000339069, ENST00000347197, ENST00000619154, ENST00000634540, ENST00000577353, ENST00000352855, ENST00000314537); NMD_transcript_variant(ENST00000583888, ENST00000347197); non_coding_transcript_variant(ENST00000634876, ENST00000581479)
|
SIFT Annotation |
deleterious; tolerated
|
SIFT Variant Effect |
deleterious(ENST00000293493, ENST00000398285, ENST00000352855, ENST00000634540, ENST00000577353); tolerated(ENST00000339069, ENST00000314537)
|
PolyPhen Annotation |
benign; probably_damaging
|
PolyPhen Variant Effect |
benign(ENST00000293493, ENST00000339069, ENST00000398285, ENST00000352855, ENST00000634540, ENST00000577353); probably_damaging(ENST00000314537)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
TF binding region;Chromatin interactive region
|
Chromatin State |
Weak transcription;Enhancers;Bivalent Enhancer
|
No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
Source |
LD-proxy |

SNP related association results

SNP related genes (count: 3)

SNPs in LD with rs17689918 (count: 0)

SNP related eQTL (count: 1)