SNP Report

Basic Info
Name |
rs17689824
dbSNP
Ensembl
|
Location |
17:45827031 - 45827031(+) |
Variant Seq |
T |
Ancestral Allele |
T |
Ref Seq |
C |
Minor Allele Frequence |
0.086262 |
Annotation |
non_coding_transcript_exon_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
|
Variant Effect |
non_coding_transcript_exon_variant(ENST00000634876); upstream_gene_variant(ENST00000581479); intron_variant(ENST00000577353, ENST00000339069, ENST00000398285, ENST00000583888, ENST00000582766, ENST00000314537, ENST00000347197, ENST00000580955, ENST00000293493, ENST00000619154, ENST00000352855, ENST00000634540); NMD_transcript_variant(ENST00000583888, ENST00000347197, ENST00000580955); non_coding_transcript_variant(ENST00000582766, ENST00000634876)
|
SIFT Annotation |
deleterious_-_low_confidence; deleterious
|
SIFT Variant Effect |
deleterious_-_low_confidence(ENST00000619154); deleterious(ENST00000577353, ENST00000339069, ENST00000583888, ENST00000293493, ENST00000352855, ENST00000398285, ENST00000347197, ENST00000314537)
|
PolyPhen Annotation |
unknown; benign; probably_damaging
|
PolyPhen Variant Effect |
unknown(ENST00000619154); benign(ENST00000577353, ENST00000339069, ENST00000293493, ENST00000352855, ENST00000398285); probably_damaging(ENST00000583888, ENST00000347197, ENST00000314537)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
TF binding region
|
Chromatin State |
Weak transcription;Enhancers
|
No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
Source |
LD-proxy |

SNP related association results

SNP related genes (count: 2)

SNPs in LD with rs17689824 (count: 0)

SNP related eQTL (count: 1)