PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs17689378 dbSNP Ensembl
Location	17:45804424 - 45804424(+)
Variant Seq	T
Ancestral Allele	C
Ref Seq	C
Minor Allele Frequence	0.0864617
Annotation	upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect	upstream_gene_variant(ENST00000580955); intron_variant(ENST00000352855, ENST00000582766, ENST00000398285, ENST00000347197, ENST00000587305, ENST00000293493, ENST00000339069, ENST00000634540, ENST00000619154, ENST00000314537, ENST00000577353, ENST00000634876); NMD_transcript_variant(ENST00000347197); non_coding_transcript_variant(ENST00000582766, ENST00000587305, ENST00000634876)
SIFT Annotation	deleterious_-_low_confidence; tolerated_-_low_confidence; tolerated
SIFT Variant Effect	deleterious_-_low_confidence(ENST00000619154); tolerated_-_low_confidence(ENST00000352855, ENST00000293493, ENST00000347197, ENST00000398285); tolerated(ENST00000314537, ENST00000577353)
PolyPhen Annotation	unknown; benign
PolyPhen Variant Effect	unknown(ENST00000619154); benign(ENST00000314537, ENST00000352855, ENST00000293493, ENST00000577353, ENST00000347197, ENST00000398285)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	TF binding region;Chromatin interactive region
Chromatin State	Enhancers;Weak transcription;Bivalent Enhancer
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
CRHR1	corticotropin releasing hormone receptor 1	17q21.31	12(6/6/0)
MAPT-AS1	MAPT antisense RNA 1	17q21.31	Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs17689378 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
DND1P1	No	Adipose Subcutaneous	cis	GTEx