PTSDgene database

SNP Report

Basic Info
Name rs17307291 dbSNP Ensembl
Location 16:55664598 - 55664598(+)
Variant Seq A
Ancestral Allele A
Ref Seq G
Minor Allele Frequence 0.250399
Annotation intron_variant
Variant Effect intron_variant(ENST00000568655, ENST00000566163, ENST00000568943, ENST00000219833, ENST00000561820, ENST00000414754, ENST00000379906, ENST00000568529)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000567238)
PolyPhen Annotation unknown
PolyPhen Variant Effect unknown(ENST00000567238)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Enhancers;Bivalent Enhancer;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2 16q12.2 13(4/9/0)

SNPs in LD with rs17307291 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx