PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs16940672 dbSNP Ensembl
Location	17:45830786 - 45830786(+)
Variant Seq	T
Ancestral Allele	C
Ref Seq	C
Minor Allele Frequence	0.0860623
Annotation	downstream_gene_variant; non_coding_transcript_exon_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect	downstream_gene_variant(ENST00000580955); non_coding_transcript_exon_variant(ENST00000581479); upstream_gene_variant(ENST00000535778, ENST00000580876); intron_variant(ENST00000583888, ENST00000347197, ENST00000398285, ENST00000634540, ENST00000619154, ENST00000339069, ENST00000293493, ENST00000577353, ENST00000582766, ENST00000352855, ENST00000634876, ENST00000314537); NMD_transcript_variant(ENST00000583888, ENST00000347197); non_coding_transcript_variant(ENST00000582766, ENST00000581479, ENST00000634876)
SIFT Annotation	deleterious; tolerated
SIFT Variant Effect	deleterious(ENST00000398285, ENST00000293493, ENST00000577353, ENST00000314537, ENST00000339069); tolerated(ENST00000352855, ENST00000634540)
PolyPhen Annotation	benign; possibly_damaging; probably_damaging
PolyPhen Variant Effect	benign(ENST00000293493, ENST00000339069); possibly_damaging(ENST00000398285, ENST00000577353, ENST00000634540); probably_damaging(ENST00000352855, ENST00000314537)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
CRHR1	corticotropin releasing hormone receptor 1	17q21.31	12(6/6/0)
MAPT-AS1	MAPT antisense RNA 1	17q21.31	Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs16940672 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
DND1P1	No	Adipose Subcutaneous	cis	GTEx