SNP Report

Basic Info
Name |
rs16940671
dbSNP
Ensembl
|
Location |
17:45830785 - 45830785(+) |
Variant Seq |
T |
Ancestral Allele |
C |
Ref Seq |
C |
Minor Allele Frequence |
0.0860623 |
Annotation |
downstream_gene_variant; non_coding_transcript_exon_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
|
Variant Effect |
downstream_gene_variant(ENST00000580955); non_coding_transcript_exon_variant(ENST00000581479); upstream_gene_variant(ENST00000580876, ENST00000535778); intron_variant(ENST00000577353, ENST00000352855, ENST00000634876, ENST00000339069, ENST00000582766, ENST00000398285, ENST00000583888, ENST00000634540, ENST00000293493, ENST00000619154, ENST00000314537, ENST00000347197); NMD_transcript_variant(ENST00000583888, ENST00000347197); non_coding_transcript_variant(ENST00000634876, ENST00000582766, ENST00000581479)
|
SIFT Annotation |
deleterious_-_low_confidence; deleterious
|
SIFT Variant Effect |
deleterious_-_low_confidence(ENST00000535778); deleterious(ENST00000577353, ENST00000314537, ENST00000398285, ENST00000293493, ENST00000634540, ENST00000352855, ENST00000339069)
|
PolyPhen Annotation |
benign; probably_damaging
|
PolyPhen Variant Effect |
benign(ENST00000535778); probably_damaging(ENST00000577353, ENST00000314537, ENST00000398285, ENST00000293493, ENST00000634540, ENST00000352855, ENST00000339069)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
n/a
|
Chromatin State |
Weak transcription
|
No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
Source |
LD-proxy |

SNP related association results

SNP related genes (count: 2)

SNPs in LD with rs16940671 (count: 0)

SNP related eQTL (count: 1)