PTSDgene database

SNP Report

Basic Info
Name rs16834851 dbSNP Ensembl
Location 1:192804950 - 192804950(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.32528
Annotation downstream_gene_variant; upstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000429211); upstream_gene_variant(ENST00000235382, ENST00000487236, ENST00000483295, ENST00000464302)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000235382)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000235382)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
RGS2 regulator of G-protein signaling 2 1q31 7(2/5/0)

SNPs in LD with rs16834851 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LURAP1 No Adipose Subcutaneous cis GTEx