PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs157595 dbSNP Ensembl
Location	19:44922203 - 44922203(+)
Variant Seq	G
Ref Seq	A
Minor Allele Frequence	0.400759
Annotation	downstream_gene_variant; upstream_gene_variant
Variant Effect	downstream_gene_variant(ENST00000588750, ENST00000592535, ENST00000589781, ENST00000590334, ENST00000586638, ENST00000592176, ENST00000592885, ENST00000588802); upstream_gene_variant(ENST00000575148, ENST00000571466, ENST00000574565, ENST00000589081, ENST00000507983)
SIFT Annotation	tolerated_-_low_confidence; deleterious_-_low_confidence; deleterious; tolerated
SIFT Variant Effect	tolerated_-_low_confidence(ENST00000589078); deleterious_-_low_confidence(ENST00000592885, ENST00000586638, ENST00000590334); deleterious(ENST00000592535); tolerated(ENST00000588802, ENST00000588750)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000592885, ENST00000588802, ENST00000589078, ENST00000586638, ENST00000590334, ENST00000592535, ENST00000588750)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region
Chromatin State	Weak transcription;Enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
APOE	apolipoprotein E	19q13.31	6(2/4/0)
APOC1P1	apolipoprotein C-I pseudogene 1	19q13.32	Mapped by LD-proxy
APOC1	apolipoprotein C-I	19q13.2	Mapped by Literature SNP, Mapped by LD-proxy

SNPs in LD with rs157595 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
FBLL1	No	Adipose Subcutaneous	cis	GTEx